ls-hdf5.cc File Reference

#include <cctype>
#include <iomanip>
#include <istream>
#include <limits>
#include <ostream>
#include <string>
#include <vector>
#include "byte-swap.h"
#include "data-conv.h"
#include "file-ops.h"
#include "glob-match.h"
#include "lo-mappers.h"
#include "mach-info.h"
#include "oct-env.h"
#include "oct-time.h"
#include "quit.h"
#include "str-vec.h"
#include "oct-locbuf.h"
#include "Cell.h"
#include "defun.h"
#include "error.h"
#include "errwarn.h"
#include "interpreter.h"
#include "interpreter-private.h"
#include "load-save.h"
#include "oct-hdf5.h"
#include "ovl.h"
#include "oct-map.h"
#include "ov-cell.h"
#include "pager.h"
#include "sysdep.h"
#include "unwind-prot.h"
#include "utils.h"
#include "variables.h"
#include "version.h"
#include "dMatrix.h"
#include "ov-lazy-idx.h"
#include "ls-utils.h"
#include "ls-hdf5.h"

Include dependency graph for ls-hdf5.cc:

Go to the source code of this file.

Functions
bool	add_hdf5_data (octave_hdf5_id loc_id, const octave_value &tc, const std::string &name, const std::string &doc, bool mark_global, bool save_as_floats)
static hid_t	check_hdf5_id_value (octave_hdf5_id id, const char *who)
octave_hdf5_err	hdf5_add_attr (octave_hdf5_id loc_id, const char *attr_name)
octave_hdf5_err	hdf5_add_scalar_attr (octave_hdf5_id loc_id, octave_hdf5_id type_id, const char *attr_name, void *buf)
bool	hdf5_check_attr (octave_hdf5_id loc_id, const char *attr_name)
bool	hdf5_get_scalar_attr (octave_hdf5_id loc_id, octave_hdf5_id type_id, const char *attr_name, void *buf)
octave_hdf5_err	hdf5_h5g_iterate (octave_hdf5_id loc_id, const char *name, int *idx, void *operator_data)
octave_hdf5_id	hdf5_make_complex_type (octave_hdf5_id num_type)
static hid_t	hdf5_make_range_type (hid_t num_type)
octave_hdf5_err	hdf5_read_next_data (octave_hdf5_id group_id, const char *name, void *dv)
static herr_t	hdf5_read_next_data_internal (hid_t group_id, const char *name, void *dv)
bool	hdf5_types_compatible (octave_hdf5_id t1, octave_hdf5_id t2)
int	load_hdf5_empty (octave_hdf5_id loc_id, const char *name, dim_vector &d)
static herr_t	load_inline_fcn (hid_t loc_id, const char *name, octave_value &retval)
static std::string	make_valid_identifier (const std::string &nm)
std::string	read_hdf5_data (std::istream &is, const std::string &, bool &global, octave_value &tc, std::string &doc, const string_vector &argv, int argv_idx, int argc)
bool	save_hdf5_data (std::ostream &os, const octave_value &tc, const std::string &name, const std::string &doc, bool mark_global, bool save_as_floats)
int	save_hdf5_empty (octave_hdf5_id loc_id, const char *name, const dim_vector &d)
octave_hdf5_id	save_type_to_hdf5 (save_type st)

Function Documentation

add_hdf5_data()

bool add_hdf5_data	(	octave_hdf5_id	loc_id,
		const octave_value &	tc,
		const std::string &	name,
		const std::string &	doc,
		bool	mark_global,
		bool	save_as_floats
	)

Definition at line 1380 of file ls-hdf5.cc.

References err_disabled_feature(), error(), octave_value::full_value(), hdf5_add_attr(), octave_value::is_diag_matrix(), octave_value::is_perm_matrix(), name, octave_H5P_DEFAULT, octave_H5S_ALL, retval, octave_value::save_hdf5(), octave_lazy_index::static_type_id(), octave_value::type_id(), and octave_value::type_name().

Referenced by octave_cell::save_hdf5(), octave_class::save_hdf5(), octave::anonymous_fcn_handle::save_hdf5(), octave_struct::save_hdf5(), octave_scalar_struct::save_hdf5(), and save_hdf5_data().

check_hdf5_id_value()

static hid_t check_hdf5_id_value ( octave_hdf5_id  id, const char *  who  )

static

Definition at line 79 of file ls-hdf5.cc.

References error(), and max().

Referenced by hdf5_h5g_iterate(), and hdf5_read_next_data().

hdf5_add_attr()

octave_hdf5_err hdf5_add_attr	(	octave_hdf5_id	loc_id,
		const char *	attr_name
	)

Definition at line 1139 of file ls-hdf5.cc.

References err_disabled_feature(), octave_H5P_DEFAULT, and retval.

Referenced by add_hdf5_data(), and save_hdf5_empty().

hdf5_add_scalar_attr()

octave_hdf5_err hdf5_add_scalar_attr	(	octave_hdf5_id	loc_id,
		octave_hdf5_id	type_id,
		const char *	attr_name,
		void *	buf
	)

Definition at line 1180 of file ls-hdf5.cc.

References err_disabled_feature(), octave_H5P_DEFAULT, and retval.

Referenced by octave_range::save_hdf5().

hdf5_check_attr()

bool hdf5_check_attr	(	octave_hdf5_id	loc_id,
		const char *	attr_name
	)

Definition at line 296 of file ls-hdf5.cc.

References err_disabled_feature(), octave_H5E_DEFAULT, and retval.

Referenced by hdf5_read_next_data_internal(), and load_hdf5_empty().

hdf5_get_scalar_attr()

bool hdf5_get_scalar_attr	(	octave_hdf5_id	loc_id,
		octave_hdf5_id	type_id,
		const char *	attr_name,
		void *	buf
	)

Definition at line 343 of file ls-hdf5.cc.

References err_disabled_feature(), octave_H5E_DEFAULT, and retval.

Referenced by octave_range::load_hdf5().

hdf5_h5g_iterate()

octave_hdf5_err hdf5_h5g_iterate	(	octave_hdf5_id	loc_id,
		const char *	name,
		int *	idx,
		void *	operator_data
	)

Definition at line 1034 of file ls-hdf5.cc.

References check_hdf5_id_value(), err_disabled_feature(), hdf5_read_next_data_internal(), and name.

Referenced by octave::anonymous_fcn_handle::load_hdf5(), octave_cell::load_hdf5(), octave_class::load_hdf5(), octave_struct::load_hdf5(), and octave_scalar_struct::load_hdf5().

hdf5_make_complex_type()

octave_hdf5_id hdf5_make_complex_type

(

octave_hdf5_id

num_type

)

Definition at line 401 of file ls-hdf5.cc.

References err_disabled_feature().

Referenced by hdf5_read_next_data_internal(), octave_complex::load_hdf5(), octave_complex_matrix::load_hdf5(), octave_sparse_complex_matrix::load_hdf5(), octave_float_complex::load_hdf5(), octave_float_complex_matrix::load_hdf5(), octave_complex::save_hdf5(), octave_complex_matrix::save_hdf5(), octave_sparse_complex_matrix::save_hdf5(), octave_float_complex::save_hdf5(), and octave_float_complex_matrix::save_hdf5().

hdf5_make_range_type()

static hid_t hdf5_make_range_type ( hid_t  num_type )

static

Definition at line 426 of file ls-hdf5.cc.

Referenced by hdf5_read_next_data_internal().

hdf5_read_next_data()

octave_hdf5_err hdf5_read_next_data	(	octave_hdf5_id	group_id,
		const char *	name,
		void *	dv
	)

Definition at line 1020 of file ls-hdf5.cc.

References check_hdf5_id_value(), err_disabled_feature(), hdf5_read_next_data_internal(), and name.

hdf5_read_next_data_internal()

static herr_t hdf5_read_next_data_internal ( hid_t  group_id, const char *  name, void *  dv  )

static

Definition at line 654 of file ls-hdf5.cc.

References octave::__get_type_info__(), d, hdf5_check_attr(), hdf5_make_complex_type(), hdf5_make_range_type(), hdf5_types_compatible(), load_inline_fcn(), octave_value_typeinfo::lookup_type(), octave::type_info::lookup_type(), make_valid_identifier(), name, octave_H5P_DEFAULT, octave_H5S_ALL, OCTAVE_LOCAL_BUFFER, retval, octave::valid_identifier(), and warning().

Referenced by hdf5_h5g_iterate(), hdf5_read_next_data(), and read_hdf5_data().

hdf5_types_compatible()

bool hdf5_types_compatible	(	octave_hdf5_id	t1,
		octave_hdf5_id	t2
	)

Definition at line 265 of file ls-hdf5.cc.

References err_disabled_feature(), and n.

Referenced by hdf5_read_next_data_internal(), octave_complex::load_hdf5(), octave_complex_matrix::load_hdf5(), octave_sparse_complex_matrix::load_hdf5(), octave_float_complex::load_hdf5(), octave_float_complex_matrix::load_hdf5(), and octave_range::load_hdf5().

load_hdf5_empty()

int load_hdf5_empty	(	octave_hdf5_id	loc_id,
		const char *	name,
		dim_vector &	d
	)

Definition at line 1280 of file ls-hdf5.cc.

References d, err_disabled_feature(), H5T_NATIVE_IDX, hdf5_check_attr(), name, octave_H5P_DEFAULT, octave_H5S_ALL, OCTAVE_LOCAL_BUFFER, and retval.

Referenced by octave_bool_matrix::load_hdf5(), octave_sparse_bool_matrix::load_hdf5(), octave_cell::load_hdf5(), octave_complex_matrix::load_hdf5(), octave_sparse_complex_matrix::load_hdf5(), octave_float_complex_matrix::load_hdf5(), octave_float_matrix::load_hdf5(), octave_matrix::load_hdf5(), octave_sparse_matrix::load_hdf5(), octave_char_matrix_str::load_hdf5(), and octave_base_int_matrix< T >::load_hdf5_internal().

load_inline_fcn()

static herr_t load_inline_fcn ( hid_t  loc_id, const char *  name, octave_value &  retval  )

static

Definition at line 438 of file ls-hdf5.cc.

References octave::__get_interpreter__(), octave::interpreter::feval(), octave_value_list::length(), name, octave_H5P_DEFAULT, octave_H5S_ALL, OCTAVE_LOCAL_BUFFER, and retval.

Referenced by hdf5_read_next_data_internal().

make_valid_identifier()

static std::string make_valid_identifier ( const std::string &  nm )

static

Definition at line 238 of file ls-hdf5.cc.

References retval.

Referenced by hdf5_read_next_data_internal().

read_hdf5_data()

std::string read_hdf5_data	(	std::istream &	is,
		const std::string &	filename,
		bool &	global,
		octave_value &	tc,
		std::string &	doc,
		const string_vector &	argv,
		int	argv_idx,
		int	argc
	)

Definition at line 1054 of file ls-hdf5.cc.

References check_hdf5_types(), Array< T >::clear(), hdf5_fstreambase::current_item, d, err_disabled_feature(), hdf5_fstreambase::file_id, hdf5_read_next_data_internal(), len, glob_match::match(), octave_H5P_DEFAULT, and retval.

Referenced by octave::load_save_system::load_vars().

save_hdf5_data()

bool save_hdf5_data	(	std::ostream &	os,
		const octave_value &	tc,
		const std::string &	name,
		const std::string &	doc,
		bool	mark_global,
		bool	save_as_floats
	)

Definition at line 1475 of file ls-hdf5.cc.

References add_hdf5_data(), check_hdf5_types(), err_disabled_feature(), hdf5_fstreambase::file_id, and name.

Referenced by octave::load_save_system::do_save().

save_hdf5_empty()

int save_hdf5_empty	(	octave_hdf5_id	loc_id,
		const char *	name,
		const dim_vector &	d
	)

Definition at line 1224 of file ls-hdf5.cc.

References d, err_disabled_feature(), H5T_NATIVE_IDX, hdf5_add_attr(), name, octave_H5P_DEFAULT, octave_H5S_ALL, OCTAVE_LOCAL_BUFFER, and retval.

Referenced by octave_bool_matrix::save_hdf5(), octave_sparse_bool_matrix::save_hdf5(), octave_cell::save_hdf5(), octave_complex_matrix::save_hdf5(), octave_sparse_complex_matrix::save_hdf5(), octave_float_complex_matrix::save_hdf5(), octave_float_matrix::save_hdf5(), octave_matrix::save_hdf5(), octave_sparse_matrix::save_hdf5(), octave_char_matrix_str::save_hdf5(), and octave_base_int_matrix< T >::save_hdf5_internal().

save_type_to_hdf5()

octave_hdf5_id save_type_to_hdf5

(

save_type

st

)

Definition at line 1324 of file ls-hdf5.cc.

References err_disabled_feature(), LS_CHAR, LS_DOUBLE, LS_FLOAT, LS_INT, LS_SHORT, LS_U_CHAR, LS_U_INT, and LS_U_SHORT.

Referenced by octave_complex_matrix::save_hdf5(), octave_sparse_complex_matrix::save_hdf5(), octave_float_complex_matrix::save_hdf5(), octave_float_matrix::save_hdf5(), octave_matrix::save_hdf5(), and octave_sparse_matrix::save_hdf5().